YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169816862, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFKPRRPR NGSGQTPRPF RRNKVMAPDA APLESRRAAR QRFLKTRGIY LLPNAFTTAA  60
   61 LFCGFFAVVQ AMNVRFEIAA IAIFVAMVLD GMDGRVARMT HTQSAFGEQF DSLSDMVSFG 120
  121 VAPALVMYEW VLKDLGRWGW LAAFVYCSGA ALRLARFNTN IGVVDKRFFQ GLPSPAAAAL 180
  181 IAGFVWLATD NRVPMKLGWL PWVAFVLTIY AGVTMVSNAP FYSGKALDVR HRVPFAAILL 240
  241 VVVAFVLVSS DPPLMLFCLF VLYGLSGYVF WAYMAIRGRA NPARSSQRDH

Type	Start	End	Confidence
Cytoplasmic	1	47	0.98
Transmembrane Helix	48	69	0.94
Non-Cytoplasmic	70	75	0.79
Transmembrane Helix	76	96	0.85
Cytoplasmic	97	111	0.84
Transmembrane Helix	112	132	0.85
Non-Cytoplasmic	133	137	0.85
Transmembrane Helix	138	157	0.93
Cytoplasmic	158	167	0.92
Transmembrane Helix	168	189	0.93
Non-Cytoplasmic	190	197	0.92
Transmembrane Helix	198	222	0.86
Cytoplasmic	223	230	0.84
Transmembrane Helix	231	248	0.95
Non-Cytoplasmic	249	254	0.73
Transmembrane Helix	255	275	0.93
Cytoplasmic	276	290	0.93