YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSD_NITEC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSYYPHPI IAREGWPFIA GAFVVALVVQ FFAGWVWALP LWLVALLVLQ FFRDPPRVIP  60
   61 TLAGAVLAPA DGRIVAVDKV QDPYLSREAL KISVFMNVFN VHSNRSPVDG EIRDQWYFPG 120
  121 SFLNASLPKA SLENERNALW IRTKEGRDVT CVQIAGLIAK RIVCHVHPGE HLARGQRFGF 180
  181 IRFGSRVDVY LPPGMKVNVG IGDKVQATQT VLAEFR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.68
Transmembrane Helix	16	43	0.83
Non-Cytoplasmic	44	216	0.50