YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|107027718, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	109	0.79
Transmembrane Helix	110	128	0.94
Cytoplasmic	129	144	0.83
Transmembrane Helix	145	167	0.91
Non-Cytoplasmic	168	186	0.87
Transmembrane Helix	187	210	0.88
Cytoplasmic	211	218	0.83
Transmembrane Helix	219	239	0.95
Non-Cytoplasmic	240	273	0.98
Transmembrane Helix	274	298	0.89
Cytoplasmic	299	308	0.89
Transmembrane Helix	309	328	0.91
Non-Cytoplasmic	329	411	0.98
Transmembrane Helix	412	435	0.90
Cytoplasmic	436	445	0.96
Transmembrane Helix	446	468	0.90
Non-Cytoplasmic	469	497	0.91
Transmembrane Helix	498	519	0.91
Cytoplasmic	520	559	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTVPMTRR AILTHVRQTA TPRPHALRTT FLIRINDLSR NRARRAVHLR RVGAFRGATS  60
   61 RPILQPTPTP VRRGPPAPAG GYRQLRSSGM DTALSALDLA RLQFAFTVSF HIVFPALSIG 120
  121 LASFIAVLEY RWLKTGKQYY KTLCLFWSKI FAVAFGMGVV SGVVMSYQFG TNWSGFSSFA 180
  181 GAVTGPLLMY EVMTAFFLEA GFLGIMLFGW NRVSPRAHFG ATLMVAIGTL ISTFWILASN 240
  241 SWMQTPQGFE IVDGRVVPTD WFAIIFNPSF PYRLFHMAIA AFIVAALVVA ATGAWHLLKG 300
  301 RRDKGVKKMF SMALWLLLVL APLQAVIGDQ HGINTLKHQP AKIAAIEGLW ETEKGGTALN 360
  361 LFGIPDMQAE TTRYAVKVPH LGSLILTHSW DGEIRGLKDF PPQDRPNSTV VFWSFRIMVG 420
  421 LGFAMIGLAA LAWLLRRRGR LYESKWFQRF ALVMGPTGFV SLLAGWVTTE AGRQPWVVYG 480
  481 VMRTAQAVSP LSVQQVSLSM MTFVIVYFLV FGTGVYYMLK LMKAGPALPD VEHDDKPDTR 540
  541 PDHTARRPMS AVDELIETV