YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114332198, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPYNAYFTV SQAAAMFVHP QFDPIAISIG PLAVRWYGLM YLLGFFLFIV LGRYRIRHQP  60
   61 GCIFTREMLD DALFFGVLGV VLGGRLGQVL FYEPGYFLQH PLEILAIWHG GMSFHGGFLG 120
  121 VIVAMIWLAR KYRLSWLSVT DFIAPLVPLG LGAGRIGNFI NGELWGRPTD VPWGMIFPYV 180
  181 DNLPRHPSQL YEFALEGLAF FILMWLYSAK PRPLGAISGM FMIGYGVFRS FCEFFREPDD 240
  241 GFLGVMTLGI SMGQWLSLPM IAAGVALVFW AYRHDQKPEK IAQDSRNKRK NRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.71
Transmembrane Helix	33	52	0.91
Cytoplasmic	53	71	0.83
Transmembrane Helix	72	92	0.90
Non-Cytoplasmic	93	104	0.95
Transmembrane Helix	105	128	0.90
Cytoplasmic	129	136	0.81
Transmembrane Helix	137	157	0.88
Non-Cytoplasmic	158	187	0.90
Transmembrane Helix	188	207	0.89
Cytoplasmic	208	213	0.82
Transmembrane Helix	214	232	0.92
Non-Cytoplasmic	233	251	0.84
Transmembrane Helix	252	273	0.91
Cytoplasmic	274	293	0.96