YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114307231, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTIGYLIV IVSVFGGFAL AGGHLGSLFQ PVELLMIAGA ALGAFFVGNS GKAIKATFKA  60
   61 LPGVFQGARY TKVVYMELMT LLYEVLGKIR KEGLMSIEAD VDDPAKSPLF TKYPKILSDH 120
  121 HAIEFITDYL RLMVGGNLNP LEIENLMDGE IETHHQEGEV PVHVIGKMGD ALPAFGIVAA 180
  181 VMGVVHTMAS VGIPPAELGK LIAAALVGTF LGILLAYGFV SPLASRLEQR LHESSKLLEC 240
  241 IKVTLLANLN GYAPALAVEF GRKVLFSTER PSFIELEKHV KQSKAK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	26	0.94
Non-Cytoplasmic	27	33	0.70
Transmembrane Helix	34	51	0.93
Cytoplasmic	52	170	0.97
Transmembrane Helix	171	193	0.87
Non-Cytoplasmic	194	200	0.81
Transmembrane Helix	201	221	0.95
Cytoplasmic	222	286	0.88