YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_NITEC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWLILIKAF LLGIVEGLTE FLPISSTGHL ILAGDLLDFN DDKAQVFTVA IQLGAILSVC  60
   61 WEYRARLINV ARGWGTRRAN RFVLNLCVAF LPAAILGLLF IKTIKYYLFH PLPVAIALVT 120
  121 GGVLILWAER REHRIEVENV DDMNWKHALK IGCAQCLALI PGTSRSGATI IGGLLSGLSR 180
  181 KAAAEFSFFL AIPIMFAATF YDVYKHREFL HSDDLGMFVV GSIAAFISAL IAIRGFIRYV 240
  241 SHHDFTLFAW YRIGFGLIVL LTAHFGLINW SAG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	32	0.83
Non-Cytoplasmic	33	43	0.87
Transmembrane Helix	44	63	0.89
Cytoplasmic	64	81	0.91
Transmembrane Helix	82	101	0.97
Non-Cytoplasmic	102	107	0.81
Transmembrane Helix	108	128	0.94
Cytoplasmic	129	181	0.76
Transmembrane Helix	182	204	0.85
Non-Cytoplasmic	205	214	0.59
Transmembrane Helix	215	237	0.92
Cytoplasmic	238	247	0.57
Transmembrane Helix	248	268	0.95
Non-Cytoplasmic	269	273	0.55