YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114308774, gi...
Protein type:	Transmembrane
Type Confidence:	0.46
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQSNPYPN AGLILIVATI KNTWQKIAFI IFLCWSAFML PVSLQAKDLP DFTDLVEKHG  60
   61 QAVVNISTVQ TQQVGVGQFL PEIPNIPEDS PFYEFFRRHI QPFSGPRKYE SRSLGSGFII 120
  121 SKDGYILTNA HVVEAANEIT VRLTDKREFS AKVIGADQKT DIALLKIDAN DLPVVTQGSP 180
  181 EQLKVGEWVV AIGAPFGFEN TVTAGIVSAK GRSLAQENYV PFIQTDVAIN PGNSGGPLFN 240
  241 MKGEVVGINS QIYSRTGGFM GLSFAIPIDV AMDIADQLKT YGKISRGKIG VMIQEMTDEL 300
  301 AESFSLDKSR GALVVSVEKG GPADKAGIKI RDVILKFDGK DIEASSDLPR IVGNTKPGSK 360
  361 VPVEIWRSGS VKKMTISVGE MPADGNIVNQ KQSKSGDATS RLGLVLRELS ANQKNQLGIE 420
  421 NGLLVDEVYD GIASSSGIRP GDIILGFNNQ DIKSIRQFNK LLNDAPKGRN IALLIRRGDV 480
  481 ATFITIKIDE

Type	Start	End	Confidence
Cytoplasmic	1	22	0.43
Transmembrane Helix	23	42	0.41
Non-Cytoplasmic	43	490	0.98