YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71550155, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKEKNTSE LLQLIVIQNN NEMITVDQIK HSLDERGFAV LLAIATLPIC LPIPAPPGFT  60
   61 TVFAIPLFIF SVQMICGMRA PWIPQWLARK AIRKKTLDKL INKITPWLRK IERHLHPRLT 120
  121 YISVHAWERI IGLFSFIFSI SIALPIPLIN FLPGWGILIM SLGLLSKDGL TIFAGMIVGT 180
  181 IGVGIALIIV ALLWMGVPIP YLHPAD

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	55	0.94
Non-Cytoplasmic	56	61	0.77
Transmembrane Helix	62	83	0.92
Cytoplasmic	84	129	0.92
Transmembrane Helix	130	152	0.85
Non-Cytoplasmic	153	171	0.63
Transmembrane Helix	172	195	0.91
Cytoplasmic	196	206	0.67