YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114307810, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISTCSLAGK RLLLGVTGGI AAYKVAELTR LLMQEGVEVQ VVMTESACRF VGIATFQGLT  60
   61 GKKVFTELWD TDVPNSMAHI NLSREADAIL IAPASADFIA KITHGLADDL LSTLCLARNC 120
  121 PLLIAPAMNL QMWENAATRR NLATLQQDGI TVLGPGSGYQ ACGETGTGRM LEPKNLLDAV 180
  181 QSFFQPKYLD GRRVLITAGP TFEAIDTVRG LTNRSSGKMG LAIAQAALAA GAQVTLVCGP 240
  241 ICLPFPAVHK LIRIVSTEEM FAAVKDEVSS SDIFISVAAV ADYRPAEQHS FKLKKTAADI 300
  301 TLTLIPNPDI LQYVASLSNP PFCVGFAAET DAVQQYAEEK RKRKKLPLIV ANNAVEAIGT 360
  361 NESALILLDD DGSHYLPRAD KNAQARLVMA HIAGLYDKHK G

Type	Start	End	Confidence
Signal Peptide	1	22	0.47
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	401	0.90