YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67102599, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAPARRHC WYDRAYRPRR RRTPPAHRPR GCPFARPRSG EAVHVAGIRG LADLPVSRGR  60
   61 RVLSVRLAGA GPGDRHAAAV RLRDAAPAGR RCDRADRARA AASPVAAVRA GRRRHHGVGR 120
  121 PRARRRGRGR RRAGRQHHAR DRGDGARHAR AAAAPAPRGR HRGGRAMTAF PKLGAIWVYL 180
  181 AASPLLGLTI TLVAYLFAQA VYARARFNPL ANPVLIAVAV IVVLLTLTHT PYPTYFEGAQ 240
  241 FVHFLLGPAT VALALPLYRQ WSKLRRTALP LLVGLLAGSL TAIVSAVGIA ALFGASHQTI 300
  301 ASLAPKSATT PIAMAVAAEI GGIPSLTAVL VISTGIFGAV CARAILNLLR IDEPAVRGFA 360
  361 LGVASHGIGT ARAFQVSEEA GAFAGLGMGL NGVLTAFVVP ILLPVLSRWI

Type	Start	End	Confidence
Non-Cytoplasmic	1	174	0.89
Transmembrane Helix	175	198	0.91
Cytoplasmic	199	209	0.80
Transmembrane Helix	210	230	0.91
Non-Cytoplasmic	231	238	0.82
Transmembrane Helix	239	258	0.93
Cytoplasmic	259	270	0.78
Transmembrane Helix	271	293	0.94
Non-Cytoplasmic	294	321	0.86
Transmembrane Helix	322	346	0.84
Cytoplasmic	347	354	0.91
Transmembrane Helix	355	374	0.90
Non-Cytoplasmic	375	381	0.77
Transmembrane Helix	382	406	0.89
Cytoplasmic	407	410	0.88