YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67104306, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	36	0.95
Non-Cytoplasmic	37	43	0.73
Transmembrane Helix	44	65	0.86
Cytoplasmic	66	70	0.63
Transmembrane Helix	71	89	0.85
Non-Cytoplasmic	90	95	0.64
Transmembrane Helix	96	116	0.94
Cytoplasmic	117	123	0.65
Transmembrane Helix	124	143	0.89
Non-Cytoplasmic	144	170	0.79
Transmembrane Helix	171	191	0.93
Cytoplasmic	192	216	0.85
Transmembrane Helix	217	240	0.87
Non-Cytoplasmic	241	256	0.86
Transmembrane Helix	257	282	0.87
Cytoplasmic	283	297	0.76
Transmembrane Helix	298	316	0.87
Non-Cytoplasmic	317	603	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRKRSDAM KTMVRNKTFW LFLVVLFALP VLPGALQVPE YWITLLNYIG LYAIVAIGLV  60
   61 LLTGVGGMTS FGQAAFVGIG AYATAFLTTR YGVSPWLALI VGVVLTALVA LVLGAVTMRL 120
  121 SGHFLPLGTI AWGLALFYLF GNLELLGKYD GINGIPALNL FGIVLESGRS LYFLIWAVVL 180
  181 AAIVSVQNLL NSRPGRAIRA LRGGGVMAEA MGVNTAWMRV VIFVYAAVLA AVSGFLYAHL 240
  241 QRAVNPTPFG LNHGIEFLFM AVVGGVSHVW GAVLGAAILT VLQDYLQTLL PKLLGSEGNF 300
  301 EIIVFGVLMV LLLQYARQGV WPFVARLFPR GPRAHVPEQA DPLPQRAKPV AGEPLLVVDN 360
  361 ARKQFGGLVA VNDVSFDVKA GQIIGLIGPN GAGKSTTFNL VTGVLRPTGG AITFRGERID 420
  421 GLTSRQIVRR GIGRTFQHVK LLPAMTVLEN VAIGAHLRGH TGVWRSIARL NAHEEAQLLA 480
  481 EAARQIRRVG LEKHMYDEAG SLALGQQRIL EIARALCCDP TLLLLDEPAA GLRYQEKQQL 540
  541 ADLLRRLKAE GMSVLLVEHD MDFVMNLTDR LVVMEFGTRI AEGLPQDVQQ DPAVLEAYLG 600
  601 GVE