YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67662194, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGQAPDDRH DDQRTQRTAS AVGARRESDD DWDVEQQDNN IVPLTRAEAE RLFGPNVSKP  60
   61 SRMTPYKVVF AQVVLSLVAT LAWWLFSKSP GAAAQSAFLG GAIGWVPSAV FVARLKAGGT 120
  121 ATVMSWVMGE ALKLALTIGM FTAVAFGWAG VHWVPFLVTY LVVLKTYWIA LAWR

Type	Start	End	Confidence
Cytoplasmic	1	67	0.97
Transmembrane Helix	68	86	0.97
Non-Cytoplasmic	87	92	0.84
Transmembrane Helix	93	113	0.93
Cytoplasmic	114	125	0.74
Transmembrane Helix	126	146	0.80
Non-Cytoplasmic	147	148	0.49
Transmembrane Helix	149	171	0.69
Cytoplasmic	172	174	0.60