YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170733600, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTTVLFYI FALLLVVSGL KVITSRNPVA SALFLVLAFF NAAAIWMLLE AEFLAILLVL  60
   61 VYVGAVMVLF LFVVMMLDIN IDYLRRDFKR FVPMATVVGA IIVIETALIL WRGYGDTHTV 120
  121 HAMATGEMAN WSNTRLIGKV IYTDYIFAFE IAGLVLLVAI IAAIGLTERK GKDSKRQRVS 180
  181 DQVKVRRNDR VRLVKMEADK PQPETAQSEA GSGTNG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.84
Transmembrane Helix	6	24	0.89
Cytoplasmic	25	29	0.84
Transmembrane Helix	30	49	0.92
Non-Cytoplasmic	50	54	0.79
Transmembrane Helix	55	77	0.91
Cytoplasmic	78	90	0.86
Transmembrane Helix	91	111	0.94
Non-Cytoplasmic	112	145	0.93
Transmembrane Helix	146	167	0.95
Cytoplasmic	168	216	0.99