YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194564792, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	61	0.93
Non-Cytoplasmic	62	68	0.72
Transmembrane Helix	69	89	0.92
Cytoplasmic	90	117	0.91
Transmembrane Helix	118	140	0.85
Non-Cytoplasmic	141	151	0.79
Transmembrane Helix	152	173	0.91
Cytoplasmic	174	181	0.83
Transmembrane Helix	182	203	0.90
Non-Cytoplasmic	204	224	0.85
Transmembrane Helix	225	248	0.85
Cytoplasmic	249	266	0.92
Transmembrane Helix	267	291	0.86
Non-Cytoplasmic	292	308	0.91
Transmembrane Helix	309	331	0.87
Cytoplasmic	332	356	0.87
Transmembrane Helix	357	379	0.88
Non-Cytoplasmic	380	386	0.75
Transmembrane Helix	387	406	0.95
Cytoplasmic	407	563	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHASERAAD PAGGADSRHA DPDALFASHE AGYAKQLKPR HVQMIAMGGA IGTGLFLGAG  60
   61 GRLQSAGPAL ALVYLVCGAF AFLIVRALGE LVLHRPTSGS FVSYAREFMG ERASFVAGWM 120
  121 YYLNWATTGI VDITAVAIYM KYWAVFSDVP QWVFALGALG IVSVMNMIGV KVFGEMEFWF 180
  181 SLVKVGTLAV FLAVGAVFLA SGHPVAGQMP GLHLIADHGG IFPHGILPAV LIVQGVVFAY 240
  241 ASIELVGVAA GETADARKVL PKAINSVMWR IALFYVGSVV LLTMLLPWTA YSAHESPFVT 300
  301 FFGKLGVPYV GTVMNVVVLT AALSSLNSGL YSTGRVLRSL AMGGSAPRFV SRMNARGVPY 360
  361 GGILITVAIN AIGVPLNYIV PAQAFEIVLN MASLGIITTW AFIVMCQIRF RRAVKRGELN 420
  421 DVPFRNAGRA VSNRGSRSRS CSGVLVLMAF DYPGRHVDDR DDSVRRARAD DRLAAREARR 480
  481 RPRALGRGAR DRGSGEQRMT THAAAAASVT RARGWIGSTR RARRSSGRNR RPCRRSARDP 540
  541 RRIAACRARR RARSVSRRRF RPT