YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84359392, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLILLLLG IEYLRTRWRG LTVLGWLWVV AGVGIFIDAL DGALHFPIEL FAWLFLIEGL  60
   61 ATLAVAGSGV GGQRILRYVK GIAVVVAAAL VFAGHHHGHF LLSMIFGTLF LVDGLLQCTA 120
  121 AWMVRYRRWH VAFAWGVVEI LLAIFFYQPY PTHYVGTVPY CLGLLLMFGG MHLLSLAARV 180
  181 RRLTRNPAFA TSRAPSIAPD IDDARDTPRF TQSEWDGPPT DDERALTVHV WTPTGTSKAE 240
  241 AHRYPVIDRY IAAVDVNGVI STGHAALESP EGIYISLYPA VEIDRSPEEF TRILRATREN 300
  301 DVPGLFQSDY ATESKAWCPS TVRVRIRNYD PAKLAAFWAS YRQNTTYNLT HRNCSSTVSN 360
  361 ALEAALDGAV WRLKGPQAGW GAFVRLLLTP ELWVAAQIRK RAVTMAWTPG LTLDYARALS 420
  421 MLADPRPFAW WKVARSAVKA IIASRRAWRE QDSAALSAGG TEAASVK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	49	0.76
Transmembrane Helix	50	70	0.92
Cytoplasmic	71	77	0.77
Transmembrane Helix	78	96	0.93
Non-Cytoplasmic	97	101	0.70
Transmembrane Helix	102	123	0.89
Cytoplasmic	124	130	0.77
Transmembrane Helix	131	149	0.94
Non-Cytoplasmic	150	155	0.81
Transmembrane Helix	156	176	0.94
Cytoplasmic	177	467	0.94