YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84328256
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKHLADAHE VGHDHDHAHD SGGNTVFGFW LYLMTDCVLF ASVFATYAVL VHHTAGGPSG  60
   61 KDIFELPYVL VETAILLVSS CTYGLAMLSA HKGAKGQAIA WLGVTFLLGA AFIGMEINEF 120
  121 HHLIAEGFGP SRSAFLSSFF TLVGMHGLHV SAGLLWMLVL MAQIWTRGLT AQNNTLDDVP 180
  181 EPVLALPRHR LDLRLHRRLP DGGPVMSSAA HDNHGAGHGS LGSYAIGFVL SVILTAIPFY 240
  241 MVMDGGFSRH ATILTMVVLG LVQVVVHLIC FLHMNMSSEG RWNVMAFIFT VIVILLVVGL 300
  301 SLWIIFSADM LMMPMP

Type	Start	End	Confidence
Cytoplasmic	1	28	0.87
Transmembrane Helix	29	51	0.89
Non-Cytoplasmic	52	67	0.78
Transmembrane Helix	68	88	0.91
Cytoplasmic	89	97	0.76
Transmembrane Helix	98	117	0.93
Non-Cytoplasmic	118	137	0.78
Transmembrane Helix	138	160	0.87
Cytoplasmic	161	220	0.86
Transmembrane Helix	221	242	0.90
Non-Cytoplasmic	243	250	0.76
Transmembrane Helix	251	272	0.94
Cytoplasmic	273	283	0.76
Transmembrane Helix	284	306	0.94
Non-Cytoplasmic	307	316	0.83