YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71282673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVLRSRRRE GALSIIRTSQ FMNYGFVIDG RKCIGCHACS VACKSENQVP LGVNRTWVKY  60
   61 VEKGSFPDTR RYFTVLRCNH CEEPPCVDIC PVEALHKRDD GIVDFDSRRC IGCKACAQAC 120
  121 PYNAVYIDPE SGTTAKCSYC SHRVEIGMKP ACAVICPQQA IVSGDLDDPH SEISVLLAKE 180
  181 RTVVRKPEKG TSPNVFYING DGASLDPLQA SESESYMWSA QSRGVGHFAK HAVEGGHFHS 240
  241 PEPAVEHHGG KAPAATARRV YDAPSKGSVW GWEVPAYVWS KAVSAGAFLM LFVFSLLPGM 300
  301 MLPEPMQWAL WAVSLLFLSL TGGFLVKDLD RPDRFVSVML RPQFSSWLVR GGLTITAYGA 360
  361 FLALWAAGMY LQLSLLVMAG LWGGAALALL TAVYTAFLFG SAKGRDFWQS PMLSLHMLLN 420
  421 SVIAGGSAMA LLSAFIGLDA ASLSLLRIVL TVAFSLHLLV MWTELYGRHP SLNAERSAEA 480
  481 ITQGALKGQF WLGSVVLGNL LPLLVLIVSP GPLLIGAAAI GALAGVFYTE KVWVQAPQSI 540
  541 SLS

Type	Start	End	Confidence
Cytoplasmic	1	276	0.99
Transmembrane Helix	277	300	0.87
Non-Cytoplasmic	301	307	0.82
Transmembrane Helix	308	326	0.98
Cytoplasmic	327	346	0.93
Transmembrane Helix	347	368	0.95
Non-Cytoplasmic	369	377	0.76
Transmembrane Helix	378	399	0.92
Cytoplasmic	400	414	0.87
Transmembrane Helix	415	437	0.90
Non-Cytoplasmic	438	443	0.80
Transmembrane Helix	444	466	0.89
Cytoplasmic	467	487	0.90
Transmembrane Helix	488	508	0.84
Non-Cytoplasmic	509	512	0.65
Transmembrane Helix	513	534	0.80
Cytoplasmic	535	543	0.80