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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|84326045
Protein type: Transmembrane
Type Confidence: 0.50
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDTKSPHE ETHGLNRRGF LGASALTGAA ALVGASALGS AVVGREARAA GKGERSKAEV  60
   61 APGELDEYYG FWSGGHSGEV RVLGVPSMRE LMRIPVFNVD SATGWGLTNE SKRVLGDSAR 120
  121 FLNGDCHHPH ISMTDGKYDG KYLFINDKAN SRVARIRLDV MKCDRIVTIP NVQAIHGLRL 180
  181 QKVPHTRYVF CNAEFIIPHP NDGSTFDLSG DNAFTLYNAI DAETMEVAWQ VIVDGNLDNT 240
  241 DMDYSGRFAA STCYNSEKAV DLGGMMRNER DWVVVFDIPR IEAEIKAKRF VTLGDSKVPV 300
  301 VDGRRKDGKD SPVTRYIPVP KNPHGLNTSP DGKYFIANGK LSPTCTMIAI ERLGDLFAGK 360
  361 LADPRDVVVG EPELGLGPLH TTFDGRGNAY TTLFIDSQLV KWNLADAVRA YKGEKVDYIR 420
  421 QKLDVQYQPG HNHATLCETS EADGKWIVVL SKFSKDRFLP TGPLHPENDQ LIDISGEEMK 480
  481 LVHDGPTFAE PHDCILARRD QIKTRKIWDR KDPFFAETVK RAEKDGIDLM KDNKVIREGN 540
  541 KVRVYMVSMA PSFGLTEFKV KQGDEVTVTI TNLDEIEDVT HGFVMVNHGV CMEISPQQTS 600
  601 SITFVADKPG VHWCYCSWFC HALHMEMCRR MPGGKGLIHA ARSLAGRRAG PLLALLLLGL 660
  661 ATARAEPVDG LPLRADGDGR WSLAAGRYAG NFVIDRPLHL RCEAGAELDG GGHGSLLTLT 720
  721 SPGITVEGCR LRNWGRNLTE LDAAIFVGKA ASGAVIRGND LRGAGFGVWL DATAGAQVLD 780
  781 NRIEGDESVR SQDRGNGIHL YAVKDALVRG NRVSHTRDGV YIDTSNDSSI EANRFEELRY 840
  841 GVHYMFTHNS RVTDNLTRRT RTGYALMQSR KLTVTGNRSI DDENYGILMN YITYSTLAGN 900
  901 RVEGVRSGST GDAMISGAEG KALFIYNSLF NRIEGNSFAD SALGIHLTAG SEDNRIAGNA 960
  961 FIGNRQQVKY VASREQEWSA DGRGNYWSDY LGWDRDDDGL GDVAYEPNDN VDRLIWLYPQ1020
 1021 VRLLLNSPSI ELLRWVQRAF PVVRSPGVRD SHPLMRMPAA EPRP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle