YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84325862
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.48
Transmembrane Helix	21	37	0.55
Non-Cytoplasmic	38	40	0.52
Transmembrane Helix	41	61	0.84
Cytoplasmic	62	71	0.76
Transmembrane Helix	72	90	0.94
Non-Cytoplasmic	91	108	0.82
Transmembrane Helix	109	132	0.80
Cytoplasmic	133	143	0.78
Transmembrane Helix	144	164	0.77
Non-Cytoplasmic	165	232	0.78
Transmembrane Helix	233	255	0.73
Cytoplasmic	256	304	0.69
Transmembrane Helix	305	329	0.80
Non-Cytoplasmic	330	349	0.55
Transmembrane Helix	350	369	0.89
Cytoplasmic	370	397	0.47
Transmembrane Helix	398	418	0.89
Non-Cytoplasmic	419	482	0.46
Transmembrane Helix	483	503	0.83
Cytoplasmic	504	514	0.43

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLFLFLPVF LGLYYLSGER YRNLLLLIAS YVFYAWWRVD FLLLFAGVTV FNYWIGLRIG  60
   61 AAGVRTRAAQ RWLILGVVVD LCVLGYFKYA NFGVDSLNEI ITSFGMQPFV LTHILLPIGI 120
  121 SFYTFESISY IIDVYRGDTP ATHNLIDFAA FVAIFPHLIA GPVLRFKDLV DQFNHRTHTV 180
  181 DKFAEGCTRF MQGFVKKVFI ADTLAALADH CFALQNPTTG DAWLGALAYT AQLYFDFSGY 240
  241 SDMAIGLGLM MGFRFMENFN QPYISQSITE FWRRWHISLS TWLRDYLYIS LGGNRGSTFQ 300
  301 TYRNLFLTML LGGLWHGANF TYIIWGAWHG MWLAIERALG VNAAPRVLNP LKWAFTFLLV 360
  361 VIGWVIFRAE NLQVAWRMYE AMFSFGTWQL SEPNRANLTG LQVGTLVLAY LVLAFFGLRQ 420
  421 FYNQPLQTKA PKAAANSDEV AADGPASAQP RAPREAAGDP AAIAYSPSGA LVYQPSWLSQ 480
  481 LPVLATRLAL LLLFAASVLK LSAQSYSPFL YFQF