YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71480773, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTATMYLS RHAEGRPPSS LKHPAGVLTA AFVSAGICLW VWHTLPGALD SLNRMIWGEY  60
   61 VNAFPAWMPQ VFNMFFLIYV IGSLFPFLFF VGLILLPDRT PVKNVSLPFV SIIIPSFNEQ 120
  121 ANIANCIESA LALDYPAYEI IIVDDGSSDE TLAIASEYDV SVISMGGNRG KAEALNHGIE 180
  181 KAKGELIFFT DSDSSLDPMV LRHLVGGFTE PSIGAVAGMV LPKHNSGYLL KMQMLEYLYG 240
  241 QCIIKVAQLK SGGAVSMCPG PATAFRRSVL MEIGGYRSRT LAEDFDITIA MLELGYRAVY 300
  301 EPKAVAYTSA MTSWKGLNKQ RLRWSRGHLQ VYREHRGLMF SAIGGSIGMF WLPWSLFFGY 360
  361 GSAFVEMAFL VAYPLLVIFS LQPLLFLQLG LVYMLILECI SAVQGMVPLA LARKLTPSLA 420
  421 FATFTTQPYR IFLSYRRIVA YMQEMQQRQN TW

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.92
Non-Cytoplasmic	44	74	0.90
Transmembrane Helix	75	96	0.94
Cytoplasmic	97	335	0.97
Transmembrane Helix	336	357	0.84
Non-Cytoplasmic	358	368	0.52
Transmembrane Helix	369	403	0.70
Cytoplasmic	404	452	0.50