YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71155563, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	243	0.99
Transmembrane Helix	244	264	0.92
Non-Cytoplasmic	265	271	0.84
Transmembrane Helix	272	295	0.91
Cytoplasmic	296	315	0.89
Transmembrane Helix	316	336	0.94
Non-Cytoplasmic	337	342	0.87
Transmembrane Helix	343	363	0.93
Cytoplasmic	364	371	0.84
Transmembrane Helix	372	394	0.92
Non-Cytoplasmic	395	412	0.95
Transmembrane Helix	413	433	0.95
Cytoplasmic	434	453	0.91
Transmembrane Helix	454	474	0.93
Non-Cytoplasmic	475	486	0.80
Transmembrane Helix	487	506	0.92
Cytoplasmic	507	517	0.80
Transmembrane Helix	518	539	0.91
Non-Cytoplasmic	540	545	0.74
Transmembrane Helix	546	569	0.87
Cytoplasmic	570	584	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRRRDSGR PVLRRRALRP RGAGRAARGG PGRQPRLRQP HRRGRAAARR AGPRPGLGRR  60
   61 HRRTALGAPG RRDGLRLRRG HDRGDARAGP CQRRQGGRHQ RRVPPGHHRG RPPAGRLCRR 120
  121 GDLQLRDQPV GRQAPGARGD APGAGAGRPD RDLRRRRRGP ADHGRPRRAW LLRRLHRRRP 180
  181 LAGRVPRRPH RGRLRGRRGR VHPRGRTGDA RRDHPSHQAR RVSDTAAAQV RADVVGRLPT 240
  241 LDRYLPVWIG LAMAAGLLLG RWVPGIADVL DAITIASVSL PIALGLLVMM YPVLAKVRYN 300
  301 EVGDVARDTR MMALSVVLNW VVGPALMFTL AWVFLADLPE YRTGLIIVGL ARCIAMVIIW 360
  361 NDLACGDREA AAVLVALNSV FQVLAFALLG WFYLDLLPGW LGLSGTGLEV SPWQIAWSVV 420
  421 VFLGIPLAAG YLSRRAGERR RGREWYEQRF LPRIGPWALY GLLFTIVVLF ALQGDTITNQ 480
  481 PADVARIAVP LVVYFALMWG GSMLAAHRAG LGYRRSTTVA FTAAGNNFEL AIAVAIAVYG 540
  541 VTSGQALAGV VGPLIEVPVL VGLVYVSLWA RRFFPDTVQE DLPR