YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194554807, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.91
Transmembrane Helix	14	33	0.95
Non-Cytoplasmic	34	51	0.93
Transmembrane Helix	52	73	0.93
Cytoplasmic	74	92	0.91
Transmembrane Helix	93	113	0.95
Non-Cytoplasmic	114	145	0.95
Transmembrane Helix	146	168	0.89
Cytoplasmic	169	188	0.91
Transmembrane Helix	189	212	0.88
Non-Cytoplasmic	213	229	0.92
Transmembrane Helix	230	251	0.91
Cytoplasmic	252	260	0.88
Transmembrane Helix	261	283	0.90
Non-Cytoplasmic	284	316	0.92
Transmembrane Helix	317	338	0.87
Cytoplasmic	339	346	0.86
Transmembrane Helix	347	366	0.94
Non-Cytoplasmic	367	400	0.92
Transmembrane Helix	401	423	0.87
Cytoplasmic	424	442	0.84
Transmembrane Helix	443	463	0.91
Non-Cytoplasmic	464	471	0.73
Transmembrane Helix	472	492	0.93
Cytoplasmic	493	661	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPTTPRST LNPPVFYTSA ALILALVLFT VLLQEEAQSL FNHVQQWIIT NASWFYVLAV  60
   61 ALILISVVFL AVSRYGDIKL GPDHSRPDYR NTTWFAMLFS AGMGIGLMFF GVAEPVMHFT 120
  121 TPPVGEPNTV QAAKEAMKLT FFHWGLHAWA IYAIVALILA FFSYRHGLPL TLRSALYPLI 180
  181 GERIYGPIGH AVDIFAIIGT VFGVATSLGY GVLQINSGLH HLFGWPVNQT VQIALIAATC 240
  241 GLATLSVASG LDRGIRVLSE LNLSLAVILL LFVLVLGPTV FLLQTYVQNT GAYLSDIVNK 300
  301 TFNLYAYEPT DWIGGWTLLY WGWWLSWSPF VGLFIARISR GRTIREFVCG VLFVPAGFTL 360
  361 LWMTVFGDTA IHMVLQEGFT QLAEVVNQDS SVALFAFLEH FPLGSVISLV AVLMVVVFFV 420
  421 TSADSGALVV DMLASSGKDH SPLWQRIFWS VLMGVVAIAL LLADGLKALQ TATIASALPF 480
  481 SIVLLASIWG LFKALHLDAT KRGIRYQALT FSRPTTRSGA SEGDGWQRRL RNIAMFPRRS 540
  541 HVNRFITDVA RPACEDVAAE LRKQGYEVQV QDGEDGRVRL EVSHGGEVDF IYEVRPRAFT 600
  601 TPSFVMRDTE DSSESRKYFR AEVHLQEGGQ DYDIMGWSRD GVIGDILDQY ERHMHFLHVV 660
  661 R