YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84323921
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAPTMTTA NSETPAGNPK RKRWLLILLA VIVLATLASV AWEFFYGRWH EDTDDAYING  60
   61 NVVQITPQIV GTVVSIGADD GDLVRKGQEL VRFDPSDADI ALQRAEANLA HTVRQVRGLF 120
  121 SNVDGYRAEV ATRKVALAKA EADYKRRKNL ADDGAISQEE LAHARDALDS AKASLTSSEQ 180
  181 QLNTNRALVD DTQITSHPDV KAAAAQLRQA YLDDARSTIV APVTGYVAKR SVQVGQRVQP 240
  241 GNALMAVVPL DQIWIDANFK ETQLKHMRIG QPVEIRSDLY GSDVRYSGTV DSLGVGTGSA 300
  301 FSLLPAQNAT GNWIKIVQRV PVRIHIDPQE LQKHPLRIGL SMDVKVDLHD QSGPALAQQP 360
  361 PREALFSTDV YQQQLASADK LIERLIEANL AEDHGKTAQR

Type	Start	End	Confidence
Signal Peptide	1	41	0.52
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	400	0.97