YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254244661, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKALKTSV FVWEGTDKKG TKVKGELSSQ NPTLVKAQLR KQGITPVKVR KKGISLLGAG  60
   61 KKIKPMDIAL FTRQMSTMMA AGVPLLQSFD IISEGFDNPN MRKLVEEIKQ EVAGGNSLAN 120
  121 SLRKKPQYFD SLYCNLVDAG EQSGALETLL DRVATYKEKT EALKAKIKKA MTYPIAVIVV 180
  181 AIIVSAILLI KVVPQFQSVF EGFGAELPAF TQMVINISNV LQEWWLLVLL MMGGAGFLLN 240
  241 HAYKRSEKFR DATDRTVLKL PIVGAILYKS AVARYARTLS TTFAAGVPLV EALDSVSGAT 300
  301 GNVVFRDAVG KIKQDVSTGM QLNFSMRTTN IFPSMAIQMT AIGEESGALD DMLAKVAGFY 360
  361 EQEVDNAVDN LTALMEPMIM AVLGVLVGGL IIAMYLPIFQ LGNVV

Type	Start	End	Confidence
Cytoplasmic	1	171	0.99
Transmembrane Helix	172	193	0.93
Non-Cytoplasmic	194	220	0.96
Transmembrane Helix	221	243	0.87
Cytoplasmic	244	378	0.90
Transmembrane Helix	379	399	0.94
Non-Cytoplasmic	400	405	0.76