YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71158451, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPGGRQSGA RRPVRLDRHD RRAGPPGAGP SAGPRGRCLM HGGRWRTLGW VVVFLAPSAV  60
   61 PLVLFTAVPM VSSAWVSLHE WNLISPMRWV GLDNYRELLT DPATREVFWH TLLYVAGYLP 120
  121 LVYVGGLGLA TALNRRMPAN AFFRAAYFLP VVTSWVVVAL VWKWLLNPGG GLVNALLGAA 180
  181 GLGQPGWWTD PAWALPSVIV ASAWKDLGFV MVILLAGLQS IPGDVLEAAD VDGATGWRRF 240
  241 LHVTLPLLSP STFFVVVISL INGFQVFDQV FVMTGGGPAG SSQVVVGQIY DLTFRYGRAG 300
  301 EASALSWLLF VVILAITAVQ IRGQRRWVHH V

Type	Start	End	Confidence
Cytoplasmic	1	46	0.99
Transmembrane Helix	47	71	0.88
Non-Cytoplasmic	72	111	0.92
Transmembrane Helix	112	133	0.91
Cytoplasmic	134	142	0.85
Transmembrane Helix	143	166	0.86
Non-Cytoplasmic	167	191	0.72
Transmembrane Helix	192	218	0.68
Cytoplasmic	219	242	0.68
Transmembrane Helix	243	264	0.89
Non-Cytoplasmic	265	301	0.65
Transmembrane Helix	302	321	0.92
Cytoplasmic	322	331	0.75