YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83840712, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDWITGLLD AAGYLGVAFL MFAENVFPPI PSELIMPLAG FLAYQDQMNL VGVVIAGSIG  60
   61 SLAGTYLYYI IARKIGRDRV RRLLEKHGRW LTMSPEDLDR ASDWFDRHGN LAVLMGRMVP 120
  121 AIRTLISVPA GLTPMHHLPF LAFSLAGTVI WNTLLTGLGY ALGSQYDLVA DYMNPVSNVV 180
  181 IGALVLTYIY RVIRKKGGSA QDATG

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	30	0.83
Non-Cytoplasmic	31	49	0.89
Transmembrane Helix	50	72	0.94
Cytoplasmic	73	137	0.92
Transmembrane Helix	138	161	0.77
Non-Cytoplasmic	162	171	0.75
Transmembrane Helix	172	190	0.91
Cytoplasmic	191	205	0.87