YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POTA_PSYCK
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESLLTPLT TPASANTDKV LLQLTGLKKT YDNTEVLKDI NLDIKHGEFI TLLGPSGCGK  60
   61 TTLLRLIAGF EQPSAGAIYL DGVQMAGLPA DKRPVNTVFQ QYALFPHMTV AQNVAYGLKL 120
  121 RKVPKVEIQT RVREMLAMVQ LEHLANRRPQ DLSGGQQQRV AIARAVINRP KLLLLDEPLS 180
  181 ALDHKLRLQM QSELKRLQRE LGITFVFVTH DQEEALSMSD RIAVMKDGRF QQIGTPIEIY 240
  241 ETPANLFTAK FIGETNLFKA EVKGVYPEQP DRDGRVTNGR IEVEVCEAQV QDGPTPVRNL 300
  301 RRPDFANDVQ VGDIVNLLLR PEDLRIYDPN DKEHGGLLGR VIESNYKGST LDSIIELTNG 360
  361 HIIKASEFFD EDDPSFDYKL NEGVKVSWVD GWEWVLPEED IH

Type	Start	End	Confidence
Signal Peptide	1	15	0.73
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	402	0.99