YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|134134791, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGAALYEAL AAAEPDPSRR DVFMQLAEAE HEHAEIWHAK LQQRGVDVAT TRPTFKTRAL  60
   61 RMLIRSFGPR FVLPALAAAE FADRDKYATQ TDAGALSADE STHAAVVAAV ARSNPSGGVK 120
  121 GSDIARAESW HRGWSGNDLR AAVLGANDGL VSNFCLVMGV AGAGASNKTI LLTGLAGLIA 180
  181 GASSMALGEW LSVTNARELA QTQIARESEE LERTPKAELR ELALIYQAKG LDRDDAHRVA 240
  241 EEMMRNRDKA LDTLTREELG LDPEELGGNP WRAAGTSFGL FALGAIFPAV PFFWSHGLVG 300
  301 IGISVSFSVL CLTVIGVVTS LFNGRSPWFS VIRQIVIGCV AAAFTYGAGA LLGVSMS

Type	Start	End	Confidence
Cytoplasmic	1	140	0.96
Transmembrane Helix	141	163	0.83
Non-Cytoplasmic	164	169	0.75
Transmembrane Helix	170	191	0.88
Cytoplasmic	192	272	0.95
Transmembrane Helix	273	294	0.87
Non-Cytoplasmic	295	300	0.68
Transmembrane Helix	301	322	0.93
Cytoplasmic	323	330	0.84
Transmembrane Helix	331	354	0.87
Non-Cytoplasmic	355	357	0.86