YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83950084, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.37
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNARTIAFW LVLFLLVVAL FNLFSGTGST LQSKPLAYSE FVSAVNEGTV SEVTLDGETV  60
   61 RFQDNAGVNY MTIKPEDAEV TKLLIEKGIP VQAESQEQSG FQAFLLTLAP FLLLIAVWVY 120
  121 FMNRMQGGGK GGAMGFGKSK AKMLTEKHGR VTFDDVAGID EAKEELEEIV EFLRNPQKFS 180
  181 RLGGQIPKGA LLVGPPGTGK TLLARAIAGE AGVPFFTISG SDFVEMFVGV GASRVRDMFE 240
  241 QAKKNAPCIV FIDEIDAVGR HRGAGYGGGN DEREQTLNQL LVEMDGFEAN EGVIIIAATN 300
  301 RKDVLDPALL RPGRFDRQVT VPNPDIKGRE KILGVHARKT PLGPDVDLRI IARGTPGFSG 360
  361 ADLANLVNEA ALMAARIGRR FVTMDDFEMA KDKVMMGAER RSMVLTQDQK EKTAYHEAGH 420
  421 AIVGLKLPKC DPVYKATIIP RGGALGMVMS LPEIDKLQMF KDELHQRIAM TMAGKAAEIF 480
  481 KYGADSVSSG PVGDIQQASQ LARAMVLRYG MSDKVGNVDY AEAHEGYSGN TAGLSVSAHT 540
  541 KELIEQEVKK FIDDGYDIAF KIISENEEEF ERLAQGLLEY ETLTGEEIKR VMRGEPPHLS 600
  601 DDEDDGSDEG NAPSVTAIPK TKPKTPRGGD GGLEPEPSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle