YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83837900, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSVLILMGI VWGAGRWLGW PAGLRWGLVA LIWAVVVLLH LTLPATSGLR QATGETAAPW  60
   61 VILAGLALLV AGYAAILRAL KRRTAQGPED QTSKDQAAKP TFSEAELDRY ARHIVLRELG 120
  121 GPGQKRLKSA RVLVVGAGGL GAPVLTYLAA AGVGRIGVID HDEVSNSNLQ RQVIFRDADI 180
  181 GRPKVEAAAE AMRALNPYVE VRPYQRRLEE DFAADLFADY DLILDGTDNF ATRYMVNRAA 240
  241 VAAGKPLISG AIAQWEGQLS LFDPGAGGPC YECIFPEAPA EGLAPSCAEA GVIGPLPGVI 300
  301 GAMMAGEAVK HITGAGTPLR GEMLIYDALY GESRKFSLSR RDDCPVCGGT TGDKDDQSAA 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	43	0.88
Non-Cytoplasmic	44	55	0.88
Transmembrane Helix	56	77	0.92
Cytoplasmic	78	131	0.96
Transmembrane Helix	132	153	0.84
Non-Cytoplasmic	154	360	0.90