YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67548078, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADERLRCDN VDQTLRHIPP SPNILRSFSA RRYGSHPLHV EGSQLFKDNL LRLRTSFLRD  60
   61 NNQPIGRRQQ PPLRTGNRQS NCTGTVHKPV ATLTPSQPRT RMENFAMEFL TLSALPAGML 120
  121 FALVTSITPG PNNTMLLASG VNFGFRRTMP HLFGISSGVA ILMLCVGFGL GEAFRRVPFL 180
  181 YTILEVASVA YLLYLAWRIG TSGEVKAHGA KPRPMTFVEA AAFQWVNPKA WMMVLTAATT 240
  241 IRLSADYGMN AAWMAVVFVM IGFPCISLWA AFGQGLRRFL SNRRALRIFN VTMAALLVLS 300
  301 LYPLVIHLLP Q

Type	Start	End	Confidence
Cytoplasmic	1	108	0.95
Transmembrane Helix	109	128	0.95
Non-Cytoplasmic	129	148	0.88
Transmembrane Helix	149	170	0.93
Cytoplasmic	171	178	0.77
Transmembrane Helix	179	197	0.89
Non-Cytoplasmic	198	250	0.86
Transmembrane Helix	251	273	0.92
Cytoplasmic	274	285	0.90
Transmembrane Helix	286	306	0.93
Non-Cytoplasmic	307	311	0.68