YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67530696, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRVALAHV PPRRAAGRAA RAAHRLRARV RARARRVRVG DLHRRQRADE VRDHVAADHH  60
   61 EARAVRLRGR DRAGGRDAGR VVPDAAADQH AAVVSAAPHE PGRERARHGG RERRGRCAMS 120
  121 RQSSIVSNNH AAAHARAATQ LDPVTEPRAV RWLLIGVALA FLAFFLVVPL AAVFFEALRK 180
  181 GVGFYLESLA DPDAWSAIRL TLTVAVIAVP LNLVFGVCAS WAIAKFEFRG KALLTTLIDL 240
  241 PFSVSPVISG LVYVLLFGAQ GWLGPWLQDH DVQIIFAVPG IVLATIFVTF PFVARELIPL 300
  301 MQAQGSDEEE AARVLGASGW QIFRRVTLPN VKWGLLYGVI LCNARAMGEF GAVSVVSGHI 360
  361 RGVTDTMPLH VEILYNEYNF AAAFAVASVL ALLALVTLAL KLLAERHLAA ELAGARDDVP 420
  421 AHAGPVAAVS SKS

Type	Start	End	Confidence
Cytoplasmic	1	151	0.99
Transmembrane Helix	152	175	0.91
Non-Cytoplasmic	176	199	0.91
Transmembrane Helix	200	223	0.89
Cytoplasmic	224	235	0.85
Transmembrane Helix	236	257	0.88
Non-Cytoplasmic	258	273	0.78
Transmembrane Helix	274	294	0.95
Cytoplasmic	295	332	0.96
Transmembrane Helix	333	353	0.84
Non-Cytoplasmic	354	379	0.85
Transmembrane Helix	380	400	0.95
Cytoplasmic	401	433	0.94