YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67547059, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVGAAPA ADADEAEGPV RSTDLAASRR VISRLRLAPG FYDIITACYG AAGQTRRSTR  60
   61 RRFRCRRSSA SCRPAWMSHG CRSRCVTCGA PACSTRRSST RGSCGAPVTS ARCSPASSMS 120
  121 RVHGVAARCE RWRVGAVQRA VRALCEPYRI RKLHRELMII HPNFDPVAIH LGPLAVRWYG 180
  181 LMYLVGFIAA IVVGRVRLKL PHVAAQGWTA KDIDDMMFYG VLGTVLGGRL GYVLFYKADF 240
  241 YLSHPLDIFK VWEGGMSFHG GFLGVTLAMI LFAWQRKRHW LQVTDFVAPM VPTGLAAGRL 300
  301 GNFINGELWG RVTDPSAPWA MLFPGAMRDD AAWLPKHPAL VEKWHLADVF MQYQMLPRHP 360
  361 SQLYEIALEG VVLFFVLFFF SRKPRPMGAV SALFLIGYGL ARFTVEFARE PDDFLGLLAL 420
  421 GLSMGQWLSL PMIVAGIAMM VWAYRRRGAN AAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	177	0.59
Transmembrane Helix	178	198	0.89
Cytoplasmic	199	215	0.91
Transmembrane Helix	216	236	0.91
Non-Cytoplasmic	237	254	0.89
Transmembrane Helix	255	274	0.94
Cytoplasmic	275	282	0.80
Transmembrane Helix	283	301	0.80
Non-Cytoplasmic	302	360	0.86
Transmembrane Helix	361	380	0.89
Cytoplasmic	381	386	0.85
Transmembrane Helix	387	405	0.91
Non-Cytoplasmic	406	423	0.77
Transmembrane Helix	424	444	0.90
Cytoplasmic	445	453	0.94