YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83857246, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPKFRAPK MNIKKGRKSK KNEVPGTLEY TGDKSGLPTK IEVFDYTADY YEYKESNSIE  60
   61 DAFDKRNTKH ISWININGLH NTEEIEKLGE HYNIHPLILE DIVDTAQRPK IDEYANYLFI 120
  121 VFKMMYHRED GEFINEHMSL IMGEDYVLTF QESDGDVFDG LRSRIANSKG RIRNNGADYL 180
  181 MFAILDAVVD NYFTVMETIS DKVETLEDLL FAQEDTKDIT QDIQDLKREI LKIRRATLPL 240
  241 REVVNRIEKI DSPLIEEKTS TFLRDLYDHI IQVNESVDIY REMIWGLMDM YMTTISNKMN 300
  301 EVMKVLTIMA SIFIPLTFMA GIYGMNFEYI PELQFKYGYF YLWGAMLIVF FGLLWYFKRK 360
  361 KWL

Type	Start	End	Confidence
Cytoplasmic	1	304	0.98
Transmembrane Helix	305	325	0.92
Non-Cytoplasmic	326	338	0.85
Transmembrane Helix	339	357	0.97
Cytoplasmic	358	363	0.93