YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67535384, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.60
Transmembrane Helix	88	107	0.44
Non-Cytoplasmic	108	155	0.84
Transmembrane Helix	156	177	0.85
Cytoplasmic	178	186	0.84
Transmembrane Helix	187	208	0.93
Non-Cytoplasmic	209	231	0.86
Transmembrane Helix	232	254	0.92
Cytoplasmic	255	269	0.87
Transmembrane Helix	270	292	0.84
Non-Cytoplasmic	293	303	0.82
Transmembrane Helix	304	322	0.76
Cytoplasmic	323	328	0.56
Transmembrane Helix	329	350	0.84
Non-Cytoplasmic	351	368	0.74
Transmembrane Helix	369	390	0.83
Cytoplasmic	391	452	0.60
Transmembrane Helix	453	476	0.84
Non-Cytoplasmic	477	513	0.64
Transmembrane Helix	514	537	0.84
Cytoplasmic	538	545	0.73
Transmembrane Helix	546	565	0.90
Non-Cytoplasmic	566	568	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAARPAER PARAAARPFG RARPCRRTLS TARRRAVAVV PATESFPSFA PGRFARTGKM  60
   61 RAAVARRASA TCICGRPRER ARSRPATISS ELSTLLQSAD SVAIVAGYST PASRWLTTIR 120
  121 HEQQATRQPD RRNAFMESIK RYFGFAEAGT DFRTEILAGV TTFLTMAYII FVNPAILGDA 180
  181 GMPKESVFVA TCLVAALASI IMGLYANYPI ACAPGMGLNA YFAYTVVKGM GFTWQAALGA 240
  241 VFISGCLFLL VTLLRVREAI VNGIPKSLRI SITAGIGLFL GIISLKTSGV IVGSPATLVT 300
  301 LGDLHKHDTI LAIVGFFTIV TLDYLRVRGA ILIGIIGVTV LSFFFGDNQF HGVFSAPPSI 360
  361 DATLFKLDIG AALSTGIINV ILVFFLVELF DATGTLMGVA NRAGLLVEGK MDRLNKALLA 420
  421 DSTAIVAGSV LGTSSTTAYI ESASGVQAGG RTGVTAITVA VLFLACLFIA PLAGVVPGYA 480
  481 TAPALLYVSC LMLREMVDVP WDDATEAVPA ALTALLMPFT YSIANGVAFG FIAYGGLKLL 540
  541 TGQARTVKPI VWIIAAVFLF RYFYLGGE