YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83850195, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTQIVLG AAVGEAVLGK KVGNKAMLWG AIAGTIPDLD TLAGNFLDPI TAIEIHRGIS  60
   61 HSILFSIGMA PLLGWLISKL YYKTKEATWQ QWSWLFFWGL VTHPLLDAHT TWGTQLFWPF 120
  121 DLRLAYQNIF VIDPLYTLPF LVCVILAMRL PRTSEKRKRV NTLGLILSSS YLVITLLLKG 180
  181 VTYFKFTTAL DNQNINYTKI DTRPAPFNSL LWSANIDASN HYLLADYSIF DTQSISFIKV 240
  241 PKQHQLLDKV EDKKALSRLI TISEGWYAVS KKGEQLYFND LRFGAYDIYA DTLNFAFSYK 300
  301 LVETKNGLTI EEPQRNSEEM KTVLGNLWNR IWGN

Type	Start	End	Confidence
Cytoplasmic	1	25	0.68
Transmembrane Helix	26	44	0.63
Non-Cytoplasmic	45	57	0.81
Transmembrane Helix	58	78	0.89
Cytoplasmic	79	91	0.79
Transmembrane Helix	92	111	0.90
Non-Cytoplasmic	112	128	0.86
Transmembrane Helix	129	150	0.89
Cytoplasmic	151	161	0.85
Transmembrane Helix	162	183	0.83
Non-Cytoplasmic	184	334	0.89