YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83855682, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.99
Transmembrane Helix	37	59	0.93
Non-Cytoplasmic	60	80	0.89
Transmembrane Helix	81	101	0.96
Cytoplasmic	102	114	0.86
Transmembrane Helix	115	138	0.82
Non-Cytoplasmic	139	158	0.95
Transmembrane Helix	159	181	0.92
Cytoplasmic	182	220	0.96
Transmembrane Helix	221	241	0.94
Non-Cytoplasmic	242	256	0.87
Transmembrane Helix	257	279	0.90
Cytoplasmic	280	298	0.88
Transmembrane Helix	299	320	0.91
Non-Cytoplasmic	321	340	0.90
Transmembrane Helix	341	360	0.94
Cytoplasmic	361	366	0.91
Transmembrane Helix	367	389	0.88
Non-Cytoplasmic	390	407	0.90
Transmembrane Helix	408	429	0.92
Cytoplasmic	430	593	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHYEAPIRQP LVTGDKSYHD VTVDVAAPVE GKANKSWWIV FSIALVAFLW GIGCIIYTVS  60
   61 TGIGTWGLNK TVGWAWDITN FVWWVGIGHA GTLISAVLLL FRQKWRMAIN RSAEAMTIFS 120
  121 VVQAGLFPII HMGRPWLAYW VLPIPNQFGS LWVNFNSPLL WDVFAISTYL SVSLVFWWTG 180
  181 LLPDFAMIRD RAVKPFQKRI YSILSFGWSG RAKDWQRFEE VSLVLAGLAT PLVLSVHTIV 240
  241 SFDFATSVIP GWHTTIFPPY FVAGAVFSGF AMVNTLLIIM RKVSNLEDYI TVQHIELMNI 300
  301 VIMITGSIVG VAYITELFIA WYSGVEYEQY AFLNRATGPY WWAYWSMMTC NVFSPQFMWF 360
  361 KKLRTSIMFS FIISIVVNIG MWFERFVIIV TSLHRDYLPS SWTMFSPTFV DIGIFIGTIG 420
  421 FFFVLFLLYS RTFPVIAQAE VKTILKSSGE NYKKIRADKG DDAKLYTPVV REPMVNSTSG 480
  481 FNEHTDISTE SHNETVNADA LVDTEAQKDK IDNLLDKIGS FDPATQKADD LKKISGVGPV 540
  541 MEQKLHQLGI YTFDQVSRMT KTEYDLLDSI IDSFPGRAER DDWAGQANTL KNK