YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67536615, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	317	0.64
Transmembrane Helix	318	340	0.88
Cytoplasmic	341	350	0.86
Transmembrane Helix	351	373	0.88
Non-Cytoplasmic	374	382	0.62
Transmembrane Helix	383	406	0.79
Cytoplasmic	407	419	0.82
Transmembrane Helix	420	441	0.91
Non-Cytoplasmic	442	450	0.80
Transmembrane Helix	451	472	0.91
Cytoplasmic	473	503	0.99
Transmembrane Helix	504	527	0.87
Non-Cytoplasmic	528	544	0.91
Transmembrane Helix	545	565	0.93
Cytoplasmic	566	575	0.85
Transmembrane Helix	576	597	0.93
Non-Cytoplasmic	598	603	0.76
Transmembrane Helix	604	625	0.90
Cytoplasmic	626	636	0.73
Transmembrane Helix	637	660	0.88
Non-Cytoplasmic	661	668	0.88
Transmembrane Helix	669	689	0.93
Cytoplasmic	690	733	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQQPREQR ERQRCGHQQP HGPPAFQHEP RQVAAHDFGH RGNGEQCRDP DQFGHPVPLG  60
   61 MSVRRAGSAR APRRHARRGP SYPREPRRNR RGTGDSEQFA RSSVIVLSCR LFQPRISFFF 120
  121 DLDRMPPAPA GRRFDRHCIH RKARPTGPLF SFRCPSGALA GAPDFRPHRY PPPASRGPFF 180
  181 MSAPSRRPIG PASKQSLAAL YRHSRSKCSK ACPDALHTTS RLPANRVGRP SVPAQSKECM 240
  241 TLTATHVSPI AASPSPSSGE APLAADDITV VDQSLLKRAV SAMAIGNAME WFDFGVYSYI 300
  301 AVTLGKVFFP SSSPSAQLLA TFGTFAAAFV VRPLGGMVFG PLGDRIGRQR VLAATMIMMA 360
  361 VGTFAIGLIP SYASIGIMAP VLLLVARLVQ GFSTGGEYGG AATFIAEFST DKRRGFMGSF 420
  421 LEFGTLIGYV MGAGVVALLT ASLSEDALLS WGWRVPFLIA GPLGLIGLYI RMKLEETPAF 480
  481 KRQAEAREAQ DKAVPKTRFR ETLFANWRAL LLCVGLVLIF NVTDYMVLSY LPSFMSSTLH 540
  541 FDESHSLVLV LIVMVLMMPL TLAAGRLSDR IGRKPVMLAG CVGLLALSIP SMMLIHAGTT 600
  601 ASVFGGLLIL GVLLSCFTGV MPSALPALFP TEIRYGALAI GFNVSVSLFG GTTPLVTAWL 660
  661 VDVTQNLMMP AYYMMGAAVI GIVSVVALAE TARQPLKGSP PAVATHREAH QLVRQLRDED 720
  721 EAEIYGVVSA ARA