YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67542193, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.54
Transmembrane Helix	66	80	0.45
Non-Cytoplasmic	81	121	0.87
Transmembrane Helix	122	143	0.88
Cytoplasmic	144	159	0.85
Transmembrane Helix	160	182	0.91
Non-Cytoplasmic	183	201	0.89
Transmembrane Helix	202	225	0.89
Cytoplasmic	226	233	0.84
Transmembrane Helix	234	254	0.95
Non-Cytoplasmic	255	288	0.98
Transmembrane Helix	289	313	0.89
Cytoplasmic	314	323	0.88
Transmembrane Helix	324	343	0.91
Non-Cytoplasmic	344	426	0.98
Transmembrane Helix	427	450	0.90
Cytoplasmic	451	460	0.96
Transmembrane Helix	461	483	0.91
Non-Cytoplasmic	484	512	0.91
Transmembrane Helix	513	534	0.91
Cytoplasmic	535	577	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRTPQPRTQ RRVDARQAIR MMRRAILPHV RPTAAQPSHA PRIALLIRIN DLSRKRARRA  60
   61 GHLRRVGTFR GAASGQILQP TPPPSTVRGP PAPAGGYRQP RSTGMNTAFS AFDLARLQFA 120
  121 FTVSFHIVFP ALSIGLASFI AVLEYRWLKT GKSYYKTLCL FWSKIFAVAF GMGVVSGVVM 180
  181 SYQFGTNWSG FSSFAGSVTG PLLMYEVMTA FFLEAGFLGI MLFGWNRVSP RAHFGATLMV 240
  241 AIGTLISTFW ILASNSWMQT PQGFEIVDGR IVPTDWLAII FNPSFPYRLL HMAIAAFIVA 300
  301 ALVVAATGAW HLLKGRRDRG VKKMFSMALW LLLVLAPLQA VIGDQHGINT LKHQPAKIAA 360
  361 IEGLWDTEKG GTALNLFGIP DMKAETTRYA VKVPHLGSLI LTHSWDGEIR GLKDFPPQDR 420
  421 PNSTIVFWSF RIMVGIGFAM IGLAVLAWLL RRRGSLYESK WFHRFALAMG PTGFVSLLAG 480
  481 WVTTEAGRQP WVVYGVMRTA QAVSPLTLQQ VSLSMMTFVI VYFLVFGTGM YYILKLMKAG 540
  541 PALPDATHDA NHDAPGSRRD HTARRPMSAV DELIETV