YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62959684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFFAFHFLLP FVILAVTILH LLFLHETGSN NPAGLNSDAD KIPFHPYFSY KDLLGFAIML  60
   61 LGLTCLALFS PNYLGDPDNF TPANPLVTPP HIKPEWYFLF AYAILRSIPN KLGGVLALLA 120
  121 SILVLMLVPF LHTSKQRSLT FRPLSQFIFW TLVADVIILT WIGGMPVEHP YIIIGQIASF 180
  181 LYFFIFLGLF PLTGWLENKL LQTACNSSSA PERRSCKPAA GG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.61
Transmembrane Helix	6	24	0.93
Cytoplasmic	25	52	0.62
Transmembrane Helix	53	74	0.87
Non-Cytoplasmic	75	111	0.71
Transmembrane Helix	112	133	0.90
Cytoplasmic	134	143	0.80
Transmembrane Helix	144	165	0.88
Non-Cytoplasmic	166	171	0.78
Transmembrane Helix	172	194	0.91
Cytoplasmic	195	222	0.87