YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83748829, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYFVKRVL GVIPTLLIVA VLVFLFVHLL PGDPARLAAG PEADTATVEL VRKDLGLDKP  60
   61 MHQQFVSFFA NAARGEFGTS LRTKRPVSDE ISERFLPTLN LTLASMVWAV VFGMAIGIAS 120
  121 AVWRNKWPDR LGMTLAVSGI SFPAFALGML LMEVFSVQLG WLPSIGADSW KHYILPSLTL 180
  181 GAAVAAVMAR FTRASFVEVL QEDFVRTARA KGVRETVVVA KHCLRNAMIP VVTMMGLQFG 240
  241 FLLGGSIVVE KVFNWPGLGR LLVDAVEMRD YPVIQAEVLL FSLEFILINL VVDVLYTVIN 300
  301 PTIRYAK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	100	0.98
Transmembrane Helix	101	123	0.89
Cytoplasmic	124	130	0.91
Transmembrane Helix	131	152	0.89
Non-Cytoplasmic	153	171	0.81
Transmembrane Helix	172	192	0.92
Cytoplasmic	193	228	0.94
Transmembrane Helix	229	249	0.90
Non-Cytoplasmic	250	277	0.91
Transmembrane Helix	278	299	0.84
Cytoplasmic	300	307	0.81