YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83747251, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAMTPDLHK LWVYLAASPL LGLTATLIAY LIAFRLYERS RFNPLVNPLL IAVAILATLL  60
   61 TLTGTPYKTY FDGAQFVHFL LGPATVALSI PLYQQWPKLR RHALPLLAGL VAGALVATVS 120
  121 AVGIAWLLGA SHETLHSIAP KSVTIPIAMG ISEKIGGAPS MTAVLVLITG ITGASTTTRL 180
  181 LNLLRIREYS VRGFATGIAA HGIGTARAFQ VNPEAGAFAA LGMGLNGIVT AVMVPLLAGW 240
  241 IPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	34	0.92
Cytoplasmic	35	44	0.85
Transmembrane Helix	45	65	0.93
Non-Cytoplasmic	66	73	0.84
Transmembrane Helix	74	93	0.94
Cytoplasmic	94	105	0.77
Transmembrane Helix	106	128	0.94
Non-Cytoplasmic	129	157	0.92
Transmembrane Helix	158	178	0.90
Cytoplasmic	179	188	0.82
Transmembrane Helix	189	209	0.90
Non-Cytoplasmic	210	216	0.80
Transmembrane Helix	217	240	0.92
Cytoplasmic	241	243	0.82