YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83727056, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITTIIFYC FSLVLVLSAL KVITAKNPVH AALFLVLSFF TAAAIWMLLK AEFLAITLVL  60
   61 VYVGAVMVLF LFVVMMIDID IEHLRRDFWT YVPMGAFVGA VIIMEMAVVL TKAFMGRSQP 120
  121 VQELPKALSG PNTQALGKLI YTDYLYAFEI AGAVLLLAIV AAVALTARRR KDTKAQKVAD 180
  181 QVRVQRKDRV RLVSMPAEKA APAASTETNS

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.80
Transmembrane Helix	5	24	0.80
Cytoplasmic	25	30	0.75
Transmembrane Helix	31	49	0.94
Non-Cytoplasmic	50	54	0.79
Transmembrane Helix	55	77	0.91
Cytoplasmic	78	87	0.89
Transmembrane Helix	88	110	0.91
Non-Cytoplasmic	111	144	0.94
Transmembrane Helix	145	167	0.92
Cytoplasmic	168	210	0.98