YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83727037, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAFNRRKKR FTASNVMHLR PLRHNQPRSD DDELEAVRPR RRRGIYLLPN AFTTAALFAG  60
   61 FFAIVQAMNL NFETAAIAIF AAMVLDGMDG RVARITNTQS AFGEQYDSLS DMCSFGVAPA 120
  121 LVMYEWILRD LGKWGWLAAF VYCAGAALRL ARFNTNIGVV DKRFFQGMPS PAAAALIAGF 180
  181 VWLAIDNKLP VKELWMPWVA FGLTLYAGLS MVSNAPFYSG KALDVRHRVP FGVMVLVLVL 240
  241 FVVVSSDPPV ALFGLFVGYA VSGYLLWGWR TVHGQAGSPR LPRETAPDAD E

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	65	0.96
Non-Cytoplasmic	66	73	0.72
Transmembrane Helix	74	93	0.73
Cytoplasmic	94	107	0.73
Transmembrane Helix	108	128	0.73
Non-Cytoplasmic	129	133	0.84
Transmembrane Helix	134	153	0.93
Cytoplasmic	154	163	0.91
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	193	0.92
Transmembrane Helix	194	218	0.85
Cytoplasmic	219	226	0.83
Transmembrane Helix	227	245	0.92
Non-Cytoplasmic	246	250	0.76
Transmembrane Helix	251	271	0.89
Cytoplasmic	272	291	0.90