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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83745880, gi|...
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFATACAIV SCDARGRYDS MPCASVPSSA NSVASSASWM SVGGASGSPT GSPLPASAGG  60
   61 SASGESEVKE ETSWKADGGR RTWRRRPRIG DRCGVQAGTS GSSCNCSSVM VSLSLRRRFF 120
  121 RRRSCSSSRS GSAESRSIRK SRSRCSICNS MMRREIVFRS LSIPFSRRHP PAPRSSLEPQ 180
  181 RAGVLVLLVA VLALLAALFQ LFLALLGILL LLLILLHALG ALGRVGGTLL LRGLQPGVVI 240
  241 GLLLGMRLGI GGTLRRFGLA LRFIQALLLL LALEIAAILL FAGFALRALG LVLRLADGAI 300
  301 AVPSLGAVGA LGLVQRQLAL ADGVEFRAAH ILGLIDAARD EEGVVAGALG LLVTVLGPRA 360
  361 GAADAVMLRA EIRRRIGWRW RVGRRRGRDR RGYRHGLAPR RRRAQHSRQR NRMGHMENTA 420
  421 HHAAHTGAKT GKRQKHRHAA HFITAPVRPT PRRARIPSGP ERALWQNARL SIALLEAMTD 480
  481 SVLQKIVSRI AAELSVKPQQ VAAAVQLLDE GATVPFIARY RKEATDNLDD TQLRNLEERL 540
  541 LYLRELEDRR AAILASIEEQ GKLTDPLRAA IEAAETKQVL EDLYLPYKPK RRTRAQIARE 600
  601 CGLEPLAQAL LADPTLDPQA EAAKFVNGQP TAEGGVPDAK AALDGARDIL SEQFGETAEL 660
  661 LGKLRDHLWS QGVVASTVVE GKETAEEEKF RDYYAYSEPI RNVPSHRALA LFRGRNAGVL 720
  721 FVKLGLGEEQ DAMSPHPCET MIARHVGIEN KGRAADKWLS DVCRWCWRVK VQPHIETELL 780
  781 TQLRESAEAE AIKIFGRNLH DLLLAAPAGP KAVMGVDPGI RTGCKVAVVD HTGKLLETAT 840
  841 IYPHEPRRDW NGSLATLARL AKQHGVALVS IGNGTASRET DKLVQDLMHH LAKSAPELKL 900
  901 TKIVVSEAGA SVYSASELAA KEFPELDVSL RGAVSIARRL QDPLAELVKI DPKSIGVGQY 960
  961 QHDVNQRELA RALDAVVEDC VNAVGVDVNT ASTALLARVS GLNSVLAKNI VEYRDANGAF1020
 1021 ANRETLRKVP RLGDKTFEQA AGFLRINNGN NPLDRSSVHP EAYPVVQRIL ERVKKGIGDV1080
 1081 LGNREALRGL TAQEFTDDKF GLPTVVDILG ELEKPGRDPR PEFKTATFQD GVEDIKHLQP1140
 1141 GMVLEGVVTN VAAFGAFIDI GVHQDGLVHV SALSTKFVRD PHEVVKPGQI VKVKVMEVDV1200
 1201 KRNRIGLTMR LTDEPGQAPT RSGGGDRPAG GNRNGGQQRR APEPAGAMAA AFAKLKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle