YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81294330
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAQLVCCVAL CLLGAGSFDA AVIQTPRHLI KMKGQQVEMN CNPEKDHPAV FWYQQKQSKE  60
   61 LKFLIYFQNQ RPVDQIDMVK ERFSAEWPSN SLCSLKISTS EVEDSALYLC SSSPPGSSNE 120
  121 RLFFGHGTKL SVLEDLKTVT PPKVSLFEPS EAEIADKQKA TLVCLARGFF PDHVELSWWV 180
  181 NGKEIRNGVS TDPQAYKESN NITYCLSSRL RVSAPFWHNP RNHFRCQVQF YGLTEEDNWS 240
  241 EDSPKPVTQN ISAEAWGRAD CGITSASYQQ GVLSATILYE ILIGKATLYA VLVSTLVVMA 300
  301 MVKRKSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	280	0.92
Transmembrane Helix	281	302	0.70
Cytoplasmic	303	307	0.70