YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194424956, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	44	0.92
Non-Cytoplasmic	45	64	0.86
Transmembrane Helix	65	84	0.92
Cytoplasmic	85	93	0.88
Transmembrane Helix	94	113	0.95
Non-Cytoplasmic	114	119	0.72
Transmembrane Helix	120	141	0.89
Cytoplasmic	142	157	0.92
Transmembrane Helix	158	180	0.90
Non-Cytoplasmic	181	187	0.77
Transmembrane Helix	188	207	0.95
Cytoplasmic	208	253	0.96
Transmembrane Helix	254	273	0.90
Non-Cytoplasmic	274	293	0.91
Transmembrane Helix	294	312	0.90
Cytoplasmic	313	321	0.81
Transmembrane Helix	322	341	0.94
Non-Cytoplasmic	342	350	0.77
Transmembrane Helix	351	373	0.91
Cytoplasmic	374	383	0.84
Transmembrane Helix	384	406	0.90
Non-Cytoplasmic	407	414	0.81
Transmembrane Helix	415	437	0.91
Cytoplasmic	438	452	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSIFKPAPH KARLPAAEID PTYRRLRWQI FLGIFFGYAA YYLVRKNFAL AMPYLVEQGF  60
   61 SRGDLGFALS GISIAYGFSK FIMGSVSDRS NPRVFLPAGL ILAAAVMLFM GFVPWATSSI 120
  121 AVMFVLLFLC GWFQGMGWPP CGRTMVHWWS QKERGGIVSV WNCAHNVGGG IPPLLFLLGM 180
  181 AWFNDWHAAL YMPAFCAILV ALFAFAMMRD TPQSCGLPPI EEYKNDYPDD YNEKAEQELT 240
  241 AKQIFMQYVL PNKLLWYIAI ANVFVYLLRY GILDWSPTYL KEVKHCALDK SSWAYFLYEY 300
  301 AGIPGTLLCG WMSDKVFRGN RGATGVFFMT LVTIATIVYW MNPAGNPTVD MICMIVIGFL 360
  361 IYGPVMLIGL HALELAPKKA AGTAAGFTGL FGYLGGSVAA SAIVGYTVDF FGWDGGFMVM 420
  421 IGGSILAVIL LIVVMIGEKR RHEQLLQKRN GG