YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194439066, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAFTWIALR FIHFTSLMLV FGFAMYGAWL APLTIRRLLA KRFLRLQQHA AVWSLISATA  60
   61 MLAVQGGLMG TGWTDVFSPN IWQAVLQTQF GGVWLWQIVL ALVTLIVALM QPRNMPRLLF 120
  121 MLTTAQFFLL AGVGHATLNE GVTEKIHQTN HAIHLICAAA WFGGLLPVLW CMQLIKGRWR 180
  181 HQTIQALMRF SWCGHFAVIG VLASGVLNAL LITGFPPTLT TYWGQLLLLK AILVMIMVVI 240
  241 ALANRYVLVP RMRQDEDRAA PLFVWMTKLE WAIGAVVLVI ISLLATLEPF

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.85
Transmembrane Helix	11	30	0.94
Cytoplasmic	31	49	0.87
Transmembrane Helix	50	72	0.90
Non-Cytoplasmic	73	89	0.90
Transmembrane Helix	90	110	0.91
Cytoplasmic	111	117	0.89
Transmembrane Helix	118	138	0.94
Non-Cytoplasmic	139	150	0.94
Transmembrane Helix	151	172	0.94
Cytoplasmic	173	191	0.90
Transmembrane Helix	192	212	0.95
Non-Cytoplasmic	213	225	0.80
Transmembrane Helix	226	248	0.92
Cytoplasmic	249	266	0.89
Transmembrane Helix	267	287	0.91
Non-Cytoplasmic	288	290	0.91