YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83584888
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLFTDVTG TVPDAEEIAH KAELFRQQTG IAPFIVVLPD INNEASLRQN GKAMLAHASS  60
   61 SLSDVKGSVL LLFTTREPRL IMITNGQVES GLDDKHLGLL IENHTLAYLH AGLWYQGINN 120
  121 ALAVLQAQIL KQPTPPLTYY PHPGKQHEND PPGSTNTLGF IAWAATFVLF SSVFYYTTRF 180
  181 IYALKFAVAM TIANMGYQAL CLYIDNSFAI TRISPLWAGL IGVCTFIAVL LLTSKR

Type	Start	End	Confidence
Cytoplasmic	1	110	0.58
Transmembrane Helix	111	125	0.35
Non-Cytoplasmic	126	156	0.72
Transmembrane Helix	157	177	0.87
Cytoplasmic	178	181	0.66
Transmembrane Helix	182	204	0.78
Non-Cytoplasmic	205	212	0.69
Transmembrane Helix	213	233	0.93
Cytoplasmic	234	236	0.74