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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83571341
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSAFPSFM TQATPATQPL INAEPVVAAQ TEQNPQVGQV MPGVQGADAP VVAQNGPSRD  60
   61 VKLTFAQIAP PPGSMVLRGI NPNGSIEFGM RSDEVVTKAM LNLEYTPSPS LLPVQSQLKV 120
  121 YLNDELMGVL PVTKEQLGKK TLAQMPINLL FITDFNRVRL EFVGHYQDVC ENPASTTLWL 180
  181 DVGRSSGLDL TYQTLNVKND LSHFPVPFFD PRDNRTNTLP MVFAGAPDVG LQQASAIVAS 240
  241 WFGSRSGWRG QNFPVLYNQL PDRNAIVFAT NDKRPDFLRD HPAVKAPVIE MINHPQNPYV 300
  301 KLLVVFGRDD KDLLQAAKGI AQGNILFRGE SVVVNEVKPL LPRKPYDAPN WVRTDRPVTF 360
  361 GELKTYEEQL QSSGLEPAAI NVSLNLPPDL YLMRSTGIDM DINYRYTMPP VKDSSRMDIS 420
  421 LNNQFLQSFN LSSKQEANRL LLRIPVLQGL LDGKTDVSIP ALKLGATNQL RFDFEYMNPM 480
  481 PGGSVDNCIT FQPVQNHVVI GDDSTIDFSK YYHFIPMPDL RAFANAGFPF SRMADLSQTI 540
  541 TVMPKAPNEA QMETLLNTVG FIGAQTGFPA INLTVTDDGS TIQGKDADIM IIGGIPDKLK 600
  601 DDKQIDLLVQ ATESWVKTPM RQTPFPGIVP DESDRAAETR STLTSSGAMA AVIGFQSPYN 660
  661 DQRSVIALLA DSPRGYEMLN DAVNDSGKRA TMFGSVAVIR ESGINSLRVG DVYYVGHLPW 720
  721 LERLWYALAN HPILLAVLAA ISVILLAWVL WRLLRIISSR RLTPDNE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle